HL_8K2D_035

3D structure

PDB id

8K2D (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the yeast 80S ribosome with tigecycline, eEF2, Stm1 and eIF5A

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

GUUAAGAUUC

Length

10 nucleotides

Bulged bases

8K2D|1|C1|U|1606, 8K2D|1|C1|U|1607

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8K2D_035 not in the Motif Atlas

Homologous match to HL_5TBW_035

Geometric discrepancy: 0.0945

The information below is about HL_5TBW_035

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_35087.1

Basepair signature

cWW-tWH-F-F-F-F

Number of instances in this motif group

7

Unit IDs

8K2D|1|C1|G|1599
8K2D|1|C1|U|1600
8K2D|1|C1|U|1601
8K2D|1|C1|A|1602
8K2D|1|C1|A|1603
8K2D|1|C1|G|1604
8K2D|1|C1|A|1605
8K2D|1|C1|U|1606
8K2D|1|C1|U|1607
8K2D|1|C1|C|1608

Current chains

Chain C1

23S rRNA

Nearby chains

Chain LR

Large ribosomal subunit protein eL19A

Chain LX

Large ribosomal subunit protein uL23

Chain Lg

Large ribosomal subunit protein eL34A