HL_8K2D_037

3D structure

PDB id

8K2D (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the yeast 80S ribosome with tigecycline, eEF2, Stm1 and eIF5A

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

GUUAUCUUU

Length

9 nucleotides

Bulged bases

8K2D|1|C1|U|1687

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8K2D_037 not in the Motif Atlas

Homologous match to HL_8C3A_037

Geometric discrepancy: 0.1094

The information below is about HL_8C3A_037

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_01927.1

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

4

Unit IDs

8K2D|1|C1|G|1680
8K2D|1|C1|U|1681
8K2D|1|C1|U|1682
8K2D|1|C1|A|1683
8K2D|1|C1|U|1684
8K2D|1|C1|C|1685
8K2D|1|C1|U|1686
8K2D|1|C1|U|1687
8K2D|1|C1|U|1688

Current chains

Chain C1

23S rRNA

Nearby chains

Chain LR

Large ribosomal subunit protein eL19A

Chain LU

Large ribosomal subunit protein eL22A