HL_8K2D_048

3D structure

PDB id

8K2D (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the yeast 80S ribosome with tigecycline, eEF2, Stm1 and eIF5A

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

AGAAAU

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8K2D_048 not in the Motif Atlas

Homologous match to HL_5TBW_048

Geometric discrepancy: 0.1201

The information below is about HL_5TBW_048

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.2

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

360

Unit IDs

8K2D|1|C1|A|2220
8K2D|1|C1|G|2221
8K2D|1|C1|A|2222
8K2D|1|C1|A|2223
8K2D|1|C1|A|2224
8K2D|1|C1|U|2225

Current chains

Chain C1

23S rRNA

Nearby chains

Chain L1

Large ribosomal subunit protein uL1A

Chain Li

Large ribosomal subunit protein eL36A

Chain Lo

Large ribosomal subunit protein eL42A