HL_8K2D_053
3D structure
- PDB id
- 8K2D (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the yeast 80S ribosome with tigecycline, eEF2, Stm1 and eIF5A
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.2 Å
Loop
- Sequence
- GAAUUCAUUUUC
- Length
- 12 nucleotides
- Bulged bases
- 8K2D|1|C1|U|2538, 8K2D|1|C1|C|2539
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
8K2D|1|C1|G|2534
8K2D|1|C1|A|2535
8K2D|1|C1|A|2536
8K2D|1|C1|U|2537
8K2D|1|C1|U|2538
8K2D|1|C1|C|2539
8K2D|1|C1|A|2540
8K2D|1|C1|U|2541
8K2D|1|C1|U|2542
8K2D|1|C1|U|2543
8K2D|1|C1|U|2544
8K2D|1|C1|C|2545
Current chains
- Chain C1
- 23S rRNA
Nearby chains
- Chain LG
- Large ribosomal subunit protein eL8A
- Chain Lg
- Large ribosomal subunit protein eL34A
- Chain SB
- 40S ribosomal protein S1-A
Coloring options: