HL_8K2D_054

3D structure

PDB id

8K2D (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the yeast 80S ribosome with tigecycline, eEF2, Stm1 and eIF5A

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

CAUUCG

Length

6 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8K2D_054 not in the Motif Atlas

Geometric match to HL_5AH5_007

Geometric discrepancy: 0.1451

The information below is about HL_5AH5_007

Detailed Annotation

Mini UNCG

Broad Annotation

No text annotation

Motif group

HL_90436.2

Basepair signature

cWW-F

Number of instances in this motif group

46

Unit IDs

8K2D|1|C1|C|2568
8K2D|1|C1|A|2569
8K2D|1|C1|U|2570
8K2D|1|C1|U|2571
8K2D|1|C1|C|2572
8K2D|1|C1|G|2573

Current chains

Chain C1

23S rRNA

Nearby chains

Chain LZ

Large ribosomal subunit protein eL27A