3D structure

PDB id
8K2D (explore in PDB, NAKB, or RNA 3D Hub)
Description
Cryo-EM structure of the yeast 80S ribosome with tigecycline, eEF2, Stm1 and eIF5A
Experimental method
ELECTRON MICROSCOPY
Resolution
3.2 Å

Loop

Sequence
CUGGGGCGG
Length
9 nucleotides
Bulged bases
8K2D|1|C1|G|2618
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_8K2D_055 not in the Motif Atlas
Homologous match to HL_8C3A_055
Geometric discrepancy: 0.0966
The information below is about HL_8C3A_055
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
HL_47383.2
Basepair signature
cWW-F-F-cWW-F-F
Number of instances in this motif group
11

Unit IDs

8K2D|1|C1|C|2616
8K2D|1|C1|U|2617
8K2D|1|C1|G|2618
8K2D|1|C1|G|2619
8K2D|1|C1|G|2620
8K2D|1|C1|G|2621
8K2D|1|C1|C|2622
8K2D|1|C1|G|2623
8K2D|1|C1|G|2624

Current chains

Chain C1
23S rRNA

Nearby chains

Chain CE
Eukaryotic translation initiation factor 5A-1
Chain LI
Large ribosomal subunit protein uL16
Chain Lb
Large ribosomal subunit protein eL29

Coloring options:


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