HL_8K2D_057
3D structure
- PDB id
- 8K2D (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the yeast 80S ribosome with tigecycline, eEF2, Stm1 and eIF5A
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.2 Å
Loop
- Sequence
- AACAGAAAU
- Length
- 9 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_8K2D_057 not in the Motif Atlas
- Homologous match to HL_8C3A_057
- Geometric discrepancy: 0.204
- The information below is about HL_8C3A_057
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_72777.1
- Basepair signature
- cWW-F-cWH-F-F-F-F
- Number of instances in this motif group
- 6
Unit IDs
8K2D|1|C1|A|2673
8K2D|1|C1|A|2674
8K2D|1|C1|C|2675
8K2D|1|C1|A|2676
8K2D|1|C1|G|2677
8K2D|1|C1|A|2678
8K2D|1|C1|A|2679
8K2D|1|C1|A|2680
8K2D|1|C1|U|2681
Current chains
- Chain C1
- 23S rRNA
Nearby chains
- Chain CS
- Suppressor protein STM1
- Chain LJ
- Large ribosomal subunit protein uL5A
Coloring options: