HL_8K2D_065

3D structure

PDB id

8K2D (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the yeast 80S ribosome with tigecycline, eEF2, Stm1 and eIF5A

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

CGUGAG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8K2D_065 not in the Motif Atlas

Homologous match to HL_8C3A_065

Geometric discrepancy: 0.0573

The information below is about HL_8C3A_065

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.2

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

360

Unit IDs

8K2D|1|C1|C|2963
8K2D|1|C1|G|2964
8K2D|1|C1|U|2965
8K2D|1|C1|G|2966
8K2D|1|C1|A|2967
8K2D|1|C1|G|2968

Current chains

Chain C1

23S rRNA

Nearby chains

Chain CE

Eukaryotic translation initiation factor 5A-1

Chain LA

Large ribosomal subunit protein uL2A