HL_8K2D_068

3D structure

PDB id

8K2D (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the yeast 80S ribosome with tigecycline, eEF2, Stm1 and eIF5A

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

CUGAACGCCUCUAAG

Length

15 nucleotides

Bulged bases

8K2D|1|C1|G|3116, 8K2D|1|C1|C|3120

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8K2D_068 not in the Motif Atlas

Homologous match to HL_8C3A_068

Geometric discrepancy: 0.0644

The information below is about HL_8C3A_068

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_56677.9

Basepair signature

cWW-tWH-cWH-tSH-tHW-tHW-tSW

Number of instances in this motif group

7

Unit IDs

8K2D|1|C1|C|3110
8K2D|1|C1|U|3111
8K2D|1|C1|G|3112
8K2D|1|C1|A|3113
8K2D|1|C1|A|3114
8K2D|1|C1|C|3115
8K2D|1|C1|G|3116
8K2D|1|C1|C|3117
8K2D|1|C1|C|3118
8K2D|1|C1|U|3119
8K2D|1|C1|C|3120
8K2D|1|C1|U|3121
8K2D|1|C1|A|3122
8K2D|1|C1|A|3123
8K2D|1|C1|G|3124

Current chains

Chain C1

23S rRNA

Nearby chains

Chain LH

Large ribosomal subunit protein uL6A

Chain LO

Large ribosomal subunit protein uL13A

Chain Lm

Ubiquitin-ribosomal protein eL40A fusion protein