HL_8K2D_071

3D structure

PDB id

8K2D (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the yeast 80S ribosome with tigecycline, eEF2, Stm1 and eIF5A

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

GUAUACGAC

Length

9 nucleotides

Bulged bases

8K2D|1|C1|U|3304

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8K2D_071 not in the Motif Atlas

Homologous match to HL_8C3A_071

Geometric discrepancy: 0.1033

The information below is about HL_8C3A_071

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_64690.4

Basepair signature

cWW-cSW-F-F-F-cWW

Number of instances in this motif group

9

Unit IDs

8K2D|1|C1|G|3303
8K2D|1|C1|U|3304
8K2D|1|C1|A|3305
8K2D|1|C1|U|3306
8K2D|1|C1|A|3307
8K2D|1|C1|C|3308
8K2D|1|C1|G|3309
8K2D|1|C1|A|3310
8K2D|1|C1|C|3311

Current chains

Chain C1

23S rRNA

Nearby chains

Chain LB

Large ribosomal subunit protein uL3

Chain LP

Large ribosomal subunit protein uL22A

Chain Ld

Large ribosomal subunit protein eL31A