HL_8K2D_073

3D structure

PDB id

8K2D (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the yeast 80S ribosome with tigecycline, eEF2, Stm1 and eIF5A

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

GUUGAUCCUGC

Length

11 nucleotides

Bulged bases

8K2D|1|C2|U|9

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8K2D_073 not in the Motif Atlas

Homologous match to HL_8C3A_192

Geometric discrepancy: 0.0579

The information below is about HL_8C3A_192

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_89881.3

Basepair signature

cWW-tHW-F-F-F-F-F-F

Number of instances in this motif group

5

Unit IDs

8K2D|1|C2|G|7
8K2D|1|C2|U|8
8K2D|1|C2|U|9
8K2D|1|C2|G|10
8K2D|1|C2|A|11
8K2D|1|C2|U|12
8K2D|1|C2|C|13
8K2D|1|C2|C|14
8K2D|1|C2|U|15
8K2D|1|C2|G|16
8K2D|1|C2|C|17

Current chains

Chain C2

18S rRNA

Nearby chains

Chain CS

Suppressor protein STM1

Chain SC

40S ribosomal protein S2

Chain SX

40S ribosomal protein S23-A