HL_8K2D_075

3D structure

PDB id

8K2D (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the yeast 80S ribosome with tigecycline, eEF2, Stm1 and eIF5A

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

GUAAUUC

Length

7 nucleotides

Bulged bases

8K2D|1|C2|U|158, 8K2D|1|C2|U|159

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8K2D_075 not in the Motif Atlas

Homologous match to HL_8C3A_194

Geometric discrepancy: 0.1353

The information below is about HL_8C3A_194

Detailed Annotation

GNRA related

Broad Annotation

GNRA related

Motif group

HL_37824.5

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

302

Unit IDs

8K2D|1|C2|G|154
8K2D|1|C2|U|155
8K2D|1|C2|A|156
8K2D|1|C2|A|157
8K2D|1|C2|U|158
8K2D|1|C2|U|159
8K2D|1|C2|C|160

Current chains

Chain C2

18S rRNA

Nearby chains

Chain SG

40S ribosomal protein S6-A

Chain SY

40S ribosomal protein S24-A