HL_8K2D_086
3D structure
- PDB id
- 8K2D (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the yeast 80S ribosome with tigecycline, eEF2, Stm1 and eIF5A
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.2 Å
Loop
- Sequence
- AAUGUAAAUACCU
- Length
- 13 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_8K2D_086 not in the Motif Atlas
- Geometric match to HL_4V88_199
- Geometric discrepancy: 0.1254
- The information below is about HL_4V88_199
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_05304.1
- Basepair signature
- cWW-cWW-F-F-tSH-F-F-F-F-F
- Number of instances in this motif group
- 5
Unit IDs
8K2D|1|C2|A|520
8K2D|1|C2|A|521
8K2D|1|C2|U|522
8K2D|1|C2|G|523
8K2D|1|C2|U|524
8K2D|1|C2|A|525
8K2D|1|C2|A|526
8K2D|1|C2|A|527
8K2D|1|C2|U|528
8K2D|1|C2|A|529
8K2D|1|C2|C|530
8K2D|1|C2|C|531
8K2D|1|C2|U|532
Current chains
- Chain C2
- 18S rRNA
Nearby chains
- Chain SE
- 40S ribosomal protein S4-A
- Chain SJ
- 40S ribosomal protein S9-A
- Chain SY
- 40S ribosomal protein S24-A
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