HL_8K2D_090

3D structure

PDB id

8K2D (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the yeast 80S ribosome with tigecycline, eEF2, Stm1 and eIF5A

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

CGUAUUG

Length

7 nucleotides

Bulged bases

8K2D|1|C2|U|779, 8K2D|1|C2|A|780, 8K2D|1|C2|U|781, 8K2D|1|C2|U|782

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8K2D_090 not in the Motif Atlas

Homologous match to HL_4V88_204

Geometric discrepancy: 0.5236

The information below is about HL_4V88_204

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_48417.1

Basepair signature

cWW-F-F

Number of instances in this motif group

23

Unit IDs

8K2D|1|C2|C|777
8K2D|1|C2|G|778
8K2D|1|C2|U|779
8K2D|1|C2|A|780
8K2D|1|C2|U|781
8K2D|1|C2|U|782
8K2D|1|C2|G|783

Current chains

Chain C2

18S rRNA

Nearby chains

Chain SE

40S ribosomal protein S4-A

Chain SJ

40S ribosomal protein S9-A

Chain SY

40S ribosomal protein S24-A