3D structure

PDB id
8K2D (explore in PDB, NAKB, or RNA 3D Hub)
Description
Cryo-EM structure of the yeast 80S ribosome with tigecycline, eEF2, Stm1 and eIF5A
Experimental method
ELECTRON MICROSCOPY
Resolution
3.2 Å

Loop

Sequence
CGCAAG
Length
6 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_8K2D_097 not in the Motif Atlas
Homologous match to HL_8C3A_216
Geometric discrepancy: 0.0879
The information below is about HL_8C3A_216
Detailed Annotation
GNRA
Broad Annotation
No text annotation
Motif group
HL_37824.5
Basepair signature
cWW-F-F-F-F
Number of instances in this motif group
302

Unit IDs

8K2D|1|C2|C|1121
8K2D|1|C2|G|1122
8K2D|1|C2|C|1123
8K2D|1|C2|A|1124
8K2D|1|C2|A|1125
8K2D|1|C2|G|1126

Current chains

Chain C2
18S rRNA

Nearby chains

Chain C1
Large subunit ribosomal RNA; LSU rRNA
Chain Ln
Large ribosomal subunit protein eL41A
Chain Lp
Large ribosomal subunit protein eL43A

Coloring options:


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