HL_8K2D_104

3D structure

PDB id

8K2D (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the yeast 80S ribosome with tigecycline, eEF2, Stm1 and eIF5A

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

CGAGAG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8K2D_104 not in the Motif Atlas

Homologous match to HL_8C3A_223

Geometric discrepancy: 0.0861

The information below is about HL_8C3A_223

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.5

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

302

Unit IDs

8K2D|1|C2|C|1501
8K2D|1|C2|G|1502
8K2D|1|C2|A|1503
8K2D|1|C2|G|1504
8K2D|1|C2|A|1505
8K2D|1|C2|G|1506

Current chains

Chain C2

18S rRNA

Nearby chains

Chain SS

Small ribosomal subunit protein uS13A

Chain ST

Small ribosomal subunit protein eS19A