HL_8K2D_106
3D structure
- PDB id
- 8K2D (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the yeast 80S ribosome with tigecycline, eEF2, Stm1 and eIF5A
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.2 Å
Loop
- Sequence
- GUCAUCAGC
- Length
- 9 nucleotides
- Bulged bases
- 8K2D|1|C2|G|1601
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_8K2D_106 not in the Motif Atlas
- Homologous match to HL_4V88_220
- Geometric discrepancy: 0.2254
- The information below is about HL_4V88_220
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_01927.1
- Basepair signature
- cWW-F-F-F-F-F
- Number of instances in this motif group
- 4
Unit IDs
8K2D|1|C2|G|1594
8K2D|1|C2|U|1595
8K2D|1|C2|C|1596
8K2D|1|C2|A|1597
8K2D|1|C2|U|1598
8K2D|1|C2|C|1599
8K2D|1|C2|A|1600
8K2D|1|C2|G|1601
8K2D|1|C2|C|1602
Current chains
- Chain C2
- 18S rRNA
Nearby chains
- Chain SQ
- Small ribosomal subunit protein uS9A
- Chain ST
- Small ribosomal subunit protein eS19A
- Chain SU
- Small ribosomal subunit protein uS10
- Chain Sd
- Small ribosomal subunit protein uS14A
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