HL_8K3O_003

3D structure

PDB id

8K3O (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of 30S ribosome with cleaved AP-mRNA bound complex I

Experimental method

ELECTRON MICROSCOPY

Resolution

3.88 Å

Loop

Sequence

UGGAAACG

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8K3O_003 not in the Motif Atlas

Homologous match to HL_6CZR_215

Geometric discrepancy: 0.5833

The information below is about HL_6CZR_215

Detailed Annotation

GNRA with extra near cWW

Broad Annotation

GNRA with extra near cWW

Motif group

HL_82182.1

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

21

Unit IDs

8K3O|1|A|U|157
8K3O|1|A|G|158
8K3O|1|A|G|159
8K3O|1|A|A|160
8K3O|1|A|A|161
8K3O|1|A|A|162
8K3O|1|A|C|163
8K3O|1|A|G|164

Current chains

Chain A

16S rRNA

Nearby chains

Chain T

30S ribosomal protein S20