HL_8K3O_021
3D structure
- PDB id
- 8K3O (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of 30S ribosome with cleaved AP-mRNA bound complex I
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.88 Å
Loop
- Sequence
- CGAUGCAACGCG
- Length
- 12 nucleotides
- Bulged bases
- 8K3O|1|A|U|965, 8K3O|1|A|G|971
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_8K3O_021 not in the Motif Atlas
- Geometric match to HL_4TUE_033
- Geometric discrepancy: 0.2906
- The information below is about HL_4TUE_033
- Detailed Annotation
- tRNA D-loop
- Broad Annotation
- No text annotation
- Motif group
- HL_93616.2
- Basepair signature
- cWW-cWS-F-F-F-F
- Number of instances in this motif group
- 8
Unit IDs
8K3O|1|A|C|962
8K3O|1|A|G|963
8K3O|1|A|A|964
8K3O|1|A|U|965
8K3O|1|A|G|966
8K3O|1|A|C|967
8K3O|1|A|A|968
8K3O|1|A|A|969
8K3O|1|A|C|970
8K3O|1|A|G|971
8K3O|1|A|C|972
8K3O|1|A|G|973
Current chains
- Chain A
- 16S rRNA
Nearby chains
- Chain I
- 30S ribosomal protein S9
- Chain J
- 30S ribosomal protein S10
- Chain N
- 30S ribosomal protein S14
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