HL_8K3O_029
3D structure
- PDB id
- 8K3O (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of 30S ribosome with cleaved AP-mRNA bound complex I
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.88 Å
Loop
- Sequence
- CUGCAACUCG
- Length
- 10 nucleotides
- Bulged bases
- 8K3O|1|A|C|1317
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_8K3O_029 not in the Motif Atlas
- Homologous match to HL_5J7L_028
- Geometric discrepancy: 0.1854
- The information below is about HL_5J7L_028
- Detailed Annotation
- T-loop with 3 stacked bulged bases
- Broad Annotation
- T-loop
- Motif group
- HL_02887.3
- Basepair signature
- cWW-tWH-F-F-F-F-F-F
- Number of instances in this motif group
- 2
Unit IDs
8K3O|1|A|C|1314
8K3O|1|A|U|1315
8K3O|1|A|G|1316
8K3O|1|A|C|1317
8K3O|1|A|A|1318
8K3O|1|A|A|1319
8K3O|1|A|C|1320
8K3O|1|A|U|1321
8K3O|1|A|C|1322
8K3O|1|A|G|1323
Current chains
- Chain A
- 16S rRNA
Nearby chains
- Chain M
- 30S ribosomal protein S13
- Chain N
- 30S ribosomal protein S14
- Chain S
- 30S ribosomal protein S19
Coloring options: