HL_8K4E_015
3D structure
- PDB id
- 8K4E (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of 30S ribosome with cleaved AP-mRNA bound complex-II
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.4 Å
Loop
- Sequence
- CGGUGAAAUG
- Length
- 10 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_8K4E_015 not in the Motif Atlas
- Homologous match to HL_6CZR_086
- Geometric discrepancy: 0.2503
- The information below is about HL_6CZR_086
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_75293.4
- Basepair signature
- cWW-F-F-F-F-F-F-F-F
- Number of instances in this motif group
- 13
Unit IDs
8K4E|1|A|C|689
8K4E|1|A|G|690
8K4E|1|A|G|691
8K4E|1|A|U|692
8K4E|1|A|G|693
8K4E|1|A|A|694
8K4E|1|A|A|695
8K4E|1|A|A|696
8K4E|1|A|U|697
8K4E|1|A|G|698
Current chains
- Chain A
- 16S rRNA
Nearby chains
- Chain K
- 30S ribosomal protein S11
- Chain X
- 30S ribosomal protein S21
Coloring options: