HL_8K4E_018

3D structure

PDB id

8K4E (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of 30S ribosome with cleaved AP-mRNA bound complex-II

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

CCUUGAG

Length

7 nucleotides

Bulged bases

8K4E|1|A|C|841, 8K4E|1|A|U|842, 8K4E|1|A|U|843

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8K4E_018 not in the Motif Atlas

Geometric match to HL_8C3A_022

Geometric discrepancy: 0.2955

The information below is about HL_8C3A_022

Detailed Annotation

Externally structured

Broad Annotation

Externally structured

Motif group

HL_96426.1

Basepair signature

cWW-F

Number of instances in this motif group

4

Unit IDs

8K4E|1|A|C|840
8K4E|1|A|C|841
8K4E|1|A|U|842
8K4E|1|A|U|843
8K4E|1|A|G|844
8K4E|1|A|A|845
8K4E|1|A|G|846

Current chains

Chain A

16S rRNA

Nearby chains

Chain R

30S ribosomal protein S18