HL_8K82_001
3D structure
- PDB id
- 8K82 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the yeast 80S ribosome with tigecycline, Not5 and P-site tRNA
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3 Å
Loop
- Sequence
- UAAGCAUA
- Length
- 8 nucleotides
- Bulged bases
- 8K82|1|C1|A|40
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_8K82_001 not in the Motif Atlas
- Homologous match to HL_8P9A_113
- Geometric discrepancy: 0.0812
- The information below is about HL_8P9A_113
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_48677.1
- Basepair signature
- cWW-F-F-F-F
- Number of instances in this motif group
- 22
Unit IDs
8K82|1|C1|U|38
8K82|1|C1|A|39
8K82|1|C1|A|40
8K82|1|C1|G|41
8K82|1|C1|C|42
8K82|1|C1|A|43
8K82|1|C1|U|44
8K82|1|C1|A|45
Current chains
- Chain C1
- 23S rRNA
Nearby chains
- Chain LL
- Large ribosomal subunit protein eL13A
- Chain LN
- Large ribosomal subunit protein eL15A
- Chain La
- Large ribosomal subunit protein uL15
- Chain Lo
- Large ribosomal subunit protein eL42A
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