HL_8K82_006

3D structure

PDB id

8K82 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the yeast 80S ribosome with tigecycline, Not5 and P-site tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

CAUAG

Length

5 nucleotides

Bulged bases

8K82|1|C1|U|210, 8K82|1|C1|A|211

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8K82_006 not in the Motif Atlas

Homologous match to HL_5TBW_006

Geometric discrepancy: 0.0507

The information below is about HL_5TBW_006

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_71121.1

Basepair signature

cWW-F

Number of instances in this motif group

24

Unit IDs

8K82|1|C1|C|208
8K82|1|C1|A|209
8K82|1|C1|U|210
8K82|1|C1|A|211
8K82|1|C1|G|212

Current chains

Chain C1

23S rRNA

Nearby chains

Chain LC

Large ribosomal subunit protein uL4A

Chain LY

Large ribosomal subunit protein uL24A