HL_8K82_014

3D structure

PDB id

8K82 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the yeast 80S ribosome with tigecycline, Not5 and P-site tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

UCUUGAAACA

Length

10 nucleotides

Bulged bases

8K82|1|C1|C|648

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8K82_014 not in the Motif Atlas

Homologous match to HL_8C3A_014

Geometric discrepancy: 0.0621

The information below is about HL_8C3A_014

Detailed Annotation

T-loop with 2 stacked bulged bases

Broad Annotation

T-loop

Motif group

HL_43993.1

Basepair signature

cWW-tWH-F-F-F-F-F

Number of instances in this motif group

141

Unit IDs

8K82|1|C1|U|640
8K82|1|C1|C|641
8K82|1|C1|U|642
8K82|1|C1|U|643
8K82|1|C1|G|644
8K82|1|C1|A|645
8K82|1|C1|A|646
8K82|1|C1|A|647
8K82|1|C1|C|648
8K82|1|C1|A|649

Current chains

Chain C1

23S rRNA

Nearby chains

Chain LB

Large ribosomal subunit protein uL3

Chain La

Large ribosomal subunit protein uL15

Chain Le

Large ribosomal subunit protein eL32