HL_8K82_029
3D structure
- PDB id
- 8K82 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the yeast 80S ribosome with tigecycline, Not5 and P-site tRNA
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3 Å
Loop
- Sequence
- UUGAUAUGAUG
- Length
- 11 nucleotides
- Bulged bases
- 8K82|1|C1|G|1354, 8K82|1|C1|U|1356
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_8K82_029 not in the Motif Atlas
- Homologous match to HL_5TBW_029
- Geometric discrepancy: 0.4275
- The information below is about HL_5TBW_029
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_01763.1
- Basepair signature
- cWW-F-F-F-F-F-F-F
- Number of instances in this motif group
- 1
Unit IDs
8K82|1|C1|U|1347
8K82|1|C1|U|1348
8K82|1|C1|G|1349
8K82|1|C1|A|1350
8K82|1|C1|U|1351
8K82|1|C1|A|1352
8K82|1|C1|U|1353
8K82|1|C1|G|1354
8K82|1|C1|A|1355
8K82|1|C1|U|1356
8K82|1|C1|G|1357
Current chains
- Chain C1
- 23S rRNA
Nearby chains
- Chain LC
- Large ribosomal subunit protein uL4A
- Chain LE
- Large ribosomal subunit protein eL6A
- Chain LQ
- Large ribosomal subunit protein eL18A
- Chain Le
- Large ribosomal subunit protein eL32
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