HL_8K82_039

3D structure

PDB id

8K82 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the yeast 80S ribosome with tigecycline, Not5 and P-site tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

CACCUUUG

Length

8 nucleotides

Bulged bases

8K82|1|C1|C|1762, 8K82|1|C1|U|1764

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8K82_039 not in the Motif Atlas

Homologous match to HL_8P9A_150

Geometric discrepancy: 0.3924

The information below is about HL_8P9A_150

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_25967.2

Basepair signature

cWW-cWW-F-F-F

Number of instances in this motif group

3

Unit IDs

8K82|1|C1|C|1759
8K82|1|C1|A|1760
8K82|1|C1|C|1761
8K82|1|C1|C|1762
8K82|1|C1|U|1763
8K82|1|C1|U|1764
8K82|1|C1|U|1765
8K82|1|C1|G|1766

Current chains

Chain C1

23S rRNA

Nearby chains

Chain LR

Large ribosomal subunit protein eL19A

Chain LU

Large ribosomal subunit protein eL22A