HL_8K82_043

3D structure

PDB id

8K82 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the yeast 80S ribosome with tigecycline, Not5 and P-site tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

CUUCGG

Length

6 nucleotides

Bulged bases

8K82|1|C1|U|1925

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8K82_043 not in the Motif Atlas

Geometric match to HL_7RQB_042

Geometric discrepancy: 0.1081

The information below is about HL_7RQB_042

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_03562.2

Basepair signature

cWW-tSW-F

Number of instances in this motif group

56

Unit IDs

8K82|1|C1|C|1923
8K82|1|C1|U|1924
8K82|1|C1|U|1925
8K82|1|C1|C|1926
8K82|1|C1|G|1927
8K82|1|C1|G|1928

Current chains

Chain C1

23S rRNA

Nearby chains

Chain C2

Small subunit ribosomal RNA; SSU rRNA

Chain Ln

Large ribosomal subunit protein eL41A

Chain Lp

Large ribosomal subunit protein eL43A