HL_8K82_056

3D structure

PDB id

8K82 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the yeast 80S ribosome with tigecycline, Not5 and P-site tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

UUAAACGAUAACG

Length

13 nucleotides

Bulged bases

8K82|1|C1|A|2637, 8K82|1|C1|C|2644

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8K82_056 not in the Motif Atlas

Homologous match to HL_5TBW_055

Geometric discrepancy: 0.0783

The information below is about HL_5TBW_055

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_19870.9

Basepair signature

cWW-tHH-cWW-tHS-F-F-tWW

Number of instances in this motif group

8

Unit IDs

8K82|1|C1|U|2633
8K82|1|C1|U|2634
8K82|1|C1|A|2635
8K82|1|C1|A|2636
8K82|1|C1|A|2637
8K82|1|C1|C|2638
8K82|1|C1|G|2639
8K82|1|C1|A|2640
8K82|1|C1|U|2641
8K82|1|C1|A|2642
8K82|1|C1|A|2643
8K82|1|C1|C|2644
8K82|1|C1|G|2645

Current chains

Chain C1

23S rRNA

Nearby chains

Chain LI

Large ribosomal subunit protein uL16

Chain LT

Large ribosomal subunit protein eL21A

Chain Lb

Large ribosomal subunit protein eL29