HL_8K82_061
3D structure
- PDB id
- 8K82 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the yeast 80S ribosome with tigecycline, Not5 and P-site tRNA
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3 Å
Loop
- Sequence
- CGGAAUUUG
- Length
- 9 nucleotides
- Bulged bases
- 8K82|1|C1|G|2777
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_8K82_061 not in the Motif Atlas
- Homologous match to HL_8C3A_061
- Geometric discrepancy: 0.0583
- The information below is about HL_8C3A_061
- Detailed Annotation
- Pseudoknot geometry
- Broad Annotation
- No text annotation
- Motif group
- HL_93324.1
- Basepair signature
- cWW-F-F-F-F-F-F
- Number of instances in this motif group
- 26
Unit IDs
8K82|1|C1|C|2776
8K82|1|C1|G|2777
8K82|1|C1|G|2778
8K82|1|C1|A|2779
8K82|1|C1|A|2780
8K82|1|C1|U|2781
8K82|1|C1|U|2782
8K82|1|C1|U|2783
8K82|1|C1|G|2784
Current chains
- Chain C1
- 23S rRNA
Nearby chains
- Chain LL
- Large ribosomal subunit protein eL13A
- Chain La
- Large ribosomal subunit protein uL15
- Chain Li
- Large ribosomal subunit protein eL36A
- Chain Lo
- Large ribosomal subunit protein eL42A
Coloring options: