HL_8K82_070

3D structure

PDB id

8K82 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the yeast 80S ribosome with tigecycline, Not5 and P-site tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

CGGAAAGG

Length

8 nucleotides

Bulged bases

8K82|1|C1|A|3243, 8K82|1|C1|A|3244

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8K82_070 not in the Motif Atlas

Homologous match to HL_5TBW_069

Geometric discrepancy: 0.0966

The information below is about HL_5TBW_069

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_24596.2

Basepair signature

cWW-F-F-F

Number of instances in this motif group

7

Unit IDs

8K82|1|C1|C|3240
8K82|1|C1|G|3241
8K82|1|C1|G|3242
8K82|1|C1|A|3243
8K82|1|C1|A|3244
8K82|1|C1|A|3245
8K82|1|C1|G|3246
8K82|1|C1|G|3247

Current chains

Chain C1

23S rRNA

Nearby chains

Chain LB

Large ribosomal subunit protein uL3

Chain LO

Large ribosomal subunit protein uL13A