HL_8K82_072

3D structure

PDB id

8K82 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the yeast 80S ribosome with tigecycline, Not5 and P-site tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

CUUG

Length

4 nucleotides

Bulged bases

8K82|1|C1|U|3351

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8K82_072 not in the Motif Atlas

Geometric match to HL_6MSF_002

Geometric discrepancy: 0.1233

The information below is about HL_6MSF_002

Detailed Annotation

Mini UNCG

Broad Annotation

No text annotation

Motif group

HL_90436.3

Basepair signature

cWW-F

Number of instances in this motif group

46

Unit IDs

8K82|1|C1|C|3350
8K82|1|C1|U|3351
8K82|1|C1|U|3352
8K82|1|C1|G|3353

Current chains

Chain C1

23S rRNA

Nearby chains

Chain SI

40S ribosomal protein S8-A