HL_8K82_080

3D structure

PDB id

8K82 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the yeast 80S ribosome with tigecycline, Not5 and P-site tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

GAUAGUGGC

Length

9 nucleotides

Bulged bases

8K82|1|C2|G|337

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8K82_080 not in the Motif Atlas

Homologous match to HL_8C3A_199

Geometric discrepancy: 0.0873

The information below is about HL_8C3A_199

Detailed Annotation

GNRA related

Broad Annotation

GNRA related

Motif group

HL_84299.2

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

9

Unit IDs

8K82|1|C2|G|330
8K82|1|C2|A|331
8K82|1|C2|U|332
8K82|1|C2|A|333
8K82|1|C2|G|334
8K82|1|C2|U|335
8K82|1|C2|G|336
8K82|1|C2|G|337
8K82|1|C2|C|338

Current chains

Chain C2

18S rRNA

Nearby chains

Chain SI

40S ribosomal protein S8-A

Chain SL

Small ribosomal subunit protein uS17A