HL_8K82_084

3D structure

PDB id

8K82 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the yeast 80S ribosome with tigecycline, Not5 and P-site tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

UAAUUCA

Length

7 nucleotides

Bulged bases

8K82|1|C2|A|452, 8K82|1|C2|U|454, 8K82|1|C2|C|455

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8K82_084 not in the Motif Atlas

Homologous match to HL_4V88_197

Geometric discrepancy: 0.2745

The information below is about HL_4V88_197

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_80922.1

Basepair signature

cWW-F-F-F

Number of instances in this motif group

4

Unit IDs

8K82|1|C2|U|450
8K82|1|C2|A|451
8K82|1|C2|A|452
8K82|1|C2|U|453
8K82|1|C2|U|454
8K82|1|C2|C|455
8K82|1|C2|A|456

Current chains

Chain C2

18S rRNA

Nearby chains

Chain SE

40S ribosomal protein S4-A

Chain SY

40S ribosomal protein S24-A