HL_8K82_095
3D structure
- PDB id
- 8K82 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the yeast 80S ribosome with tigecycline, Not5 and P-site tRNA
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3 Å
Loop
- Sequence
- GAUCAGAUACC
- Length
- 11 nucleotides
- Bulged bases
- 8K82|1|C2|U|1004
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_8K82_095 not in the Motif Atlas
- Homologous match to HL_4V88_208
- Geometric discrepancy: 0.1127
- The information below is about HL_4V88_208
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_75293.2
- Basepair signature
- cWW-F-F-F-F-F-F-F-F
- Number of instances in this motif group
- 14
Unit IDs
8K82|1|C2|G|997
8K82|1|C2|A|998
8K82|1|C2|U|999
8K82|1|C2|C|1000
8K82|1|C2|A|1001
8K82|1|C2|G|1002
8K82|1|C2|A|1003
8K82|1|C2|U|1004
8K82|1|C2|A|1005
8K82|1|C2|C|1006
8K82|1|C2|C|1007
Current chains
- Chain C2
- 18S rRNA
Nearby chains
- Chain C1
- Large subunit ribosomal RNA; LSU rRNA
- Chain C5
- Transfer RNA; tRNA
- Chain C7
- mRNA
- Chain CN
- General negative regulator of transcription subunit 5
- Chain SO
- 40S ribosomal protein S14-A
- Chain Sa
- Small ribosomal subunit protein eS26B
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