HL_8K82_102

3D structure

PDB id

8K82 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the yeast 80S ribosome with tigecycline, Not5 and P-site tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

CUUAAUUG

Length

8 nucleotides

Bulged bases

8K82|1|C2|U|1314

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8K82_102 not in the Motif Atlas

Homologous match to HL_8C3A_220

Geometric discrepancy: 0.0822

The information below is about HL_8C3A_220

Detailed Annotation

T-loop related

Broad Annotation

T-loop

Motif group

HL_77436.3

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

22

Unit IDs

8K82|1|C2|C|1309
8K82|1|C2|U|1310
8K82|1|C2|U|1311
8K82|1|C2|A|1312
8K82|1|C2|A|1313
8K82|1|C2|U|1314
8K82|1|C2|U|1315
8K82|1|C2|G|1316

Current chains

Chain C2

18S rRNA

Nearby chains

Chain SR

Small ribosomal subunit protein eS17A