HL_8K82_106
3D structure
- PDB id
- 8K82 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the yeast 80S ribosome with tigecycline, Not5 and P-site tRNA
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3 Å
Loop
- Sequence
- AUUGUAAUUAUU
- Length
- 12 nucleotides
- Bulged bases
- 8K82|1|C2|A|1559
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_8K82_106 not in the Motif Atlas
- Homologous match to HL_8C3A_224
- Geometric discrepancy: 0.093
- The information below is about HL_8C3A_224
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_03273.2
- Basepair signature
- cWW-F-F-tWH-F-F-F
- Number of instances in this motif group
- 3
Unit IDs
8K82|1|C2|A|1550
8K82|1|C2|U|1551
8K82|1|C2|U|1552
8K82|1|C2|G|1553
8K82|1|C2|U|1554
8K82|1|C2|A|1555
8K82|1|C2|A|1556
8K82|1|C2|U|1557
8K82|1|C2|U|1558
8K82|1|C2|A|1559
8K82|1|C2|U|1560
8K82|1|C2|U|1561
Current chains
- Chain C2
- 18S rRNA
Nearby chains
- Chain SP
- Small ribosomal subunit protein uS19
- Chain SS
- Small ribosomal subunit protein uS13A
- Chain ST
- Small ribosomal subunit protein eS19A
- Chain Sd
- Small ribosomal subunit protein uS14A
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