HL_8K82_116
3D structure
- PDB id
- 8K82 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the yeast 80S ribosome with tigecycline, Not5 and P-site tRNA
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3 Å
Loop
- Sequence
- GCUCAU(T6A)AC
- Length
- 9 nucleotides
- Bulged bases
- None detected
- QA status
- Modified nucleotides: T6A
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_8K82_116 not in the Motif Atlas
- Homologous match to HL_5E81_212
- Geometric discrepancy: 0.0947
- The information below is about HL_5E81_212
- Detailed Annotation
- tRNA anticodon loop
- Broad Annotation
- Anticodon loop
- Motif group
- HL_06059.7
- Basepair signature
- cWW-F-F-F-F-F-F-F
- Number of instances in this motif group
- 51
Unit IDs
8K82|1|C5|G|30
8K82|1|C5|C|31
8K82|1|C5|U|32
8K82|1|C5|C|33
8K82|1|C5|A|34
8K82|1|C5|U|35
8K82|1|C5|T6A|36
8K82|1|C5|A|37
8K82|1|C5|C|38
Current chains
- Chain C5
- tRNA
Nearby chains
- Chain C2
- Small subunit ribosomal RNA; SSU rRNA
- Chain C7
- mRNA
- Chain SQ
- Small ribosomal subunit protein uS9A
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