HL_8K82_121
3D structure
- PDB id
- 8K82 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the yeast 80S ribosome with tigecycline, Not5 and P-site tRNA
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3 Å
Loop
- Sequence
- UUCCCGUCCGAUCA
- Length
- 14 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_8K82_121 not in the Motif Atlas
- Homologous match to HL_8C3A_228
- Geometric discrepancy: 0.0832
- The information below is about HL_8C3A_228
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_50688.1
- Basepair signature
- cWW-cWS-F-tSW-F-tSH-tSH-cWW-F-F
- Number of instances in this motif group
- 2
Unit IDs
8K82|1|C4|U|32
8K82|1|C4|U|33
8K82|1|C4|C|34
8K82|1|C4|C|35
8K82|1|C4|C|36
8K82|1|C4|G|37
8K82|1|C4|U|38
8K82|1|C4|C|39
8K82|1|C4|C|40
8K82|1|C4|G|41
8K82|1|C4|A|42
8K82|1|C4|U|43
8K82|1|C4|C|44
8K82|1|C4|A|45
Current chains
- Chain C4
- 5S rRNA
Nearby chains
- Chain C1
- Large subunit ribosomal RNA; LSU rRNA
- Chain LD
- Large ribosomal subunit protein uL18
- Chain LJ
- Large ribosomal subunit protein uL5A
Coloring options: