3D structure

PDB id
8KAL (explore in PDB, NAKB, or RNA 3D Hub)
Description
Crystal structure of SpyCas9 in complex with sgRNA and 17nt target DNA
Experimental method
X-RAY DIFFRACTION
Resolution
3.16 Å

Loop

Sequence
CUAG
Length
4 nucleotides
Bulged bases (A, C, G, U)
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
HL_49678.3
Basepair signature
cWW-F
Number of instances in this motif group
11

Unit IDs

8KAL|1|A|C|55
8KAL|1|A|U|56
8KAL|1|A|A|57
8KAL|1|A|G|58

Current chains

Chain A
RNA (98-MER)

Nearby chains

Chain B
CRISPR-associated endonuclease Cas9/Csn1

Coloring options:

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