HL_8KAL_002
3D structure
- PDB id
- 8KAL (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of SpyCas9 in complex with sgRNA and 17nt target DNA
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.16 Å
Loop
- Sequence
- CUAG
- Length
- 4 nucleotides
- Bulged bases (A, C, G, U)
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_49678.3
- Basepair signature
- cWW-F
- Number of instances in this motif group
- 11
Unit IDs
8KAL|1|A|C|55
8KAL|1|A|U|56
8KAL|1|A|A|57
8KAL|1|A|G|58
Current chains
- Chain A
- RNA (98-MER)
Nearby chains
- Chain B
- CRISPR-associated endonuclease Cas9/Csn1
Coloring options: