8KAL Hairpin, Internal, and multi-helix Junction Loop Motifs
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| HL_8KAL_001 | 1/A/31:38 | GNRA with extra cWW HL_87268.1 | ||
| HL_8KAL_002 | 1/A/55:58 | Mini UNCG HL_90436.2 | ||
| HL_8KAL_003 | 1/A/87:91 | Other HL HL_75660.7 | ||
| HL_8KAL_004 | 1/E/31:38 | tRNA anticodon loop | geometric HL_3RG5_006 HL_87268.1 | |
| HL_8KAL_005 | 1/E/55:58 | Mini UNCG | geometric HL_6AEG_002 NA | |
| HL_8KAL_009 | 1/E/72:77 | GNRA | geometric HL_2OIU_001 HL_34789.2 | |
| HL_8KAL_007 | 1/E/87:91 | Other HL | geometric HL_5F9R_004 HL_18141.2 |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| HL_8KAL_008 | No text annotation | ||
| HL_8KAL_006 | tRNA anticodon loop |
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| IL_8KAL_008 | 1/A/26:29, 1/A/40:45 | No text annotation IL_82683.3 | ||
| IL_8KAL_003 | 1/A/54:55, 1/A/58:60 | Single bulged U IL_97561.2 | ||
| IL_8KAL_011 | 1/E/26:29, 1/E/40:45 | No text annotation | geometric IL_8KAL_008 IL_82683.3 | |
| IL_8KAL_005 | 1/E/54:55, 1/E/58:60 | Single bulged U | geometric IL_5B2T_002 IL_97561.2 |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| IL_8KAL_006 | No text annotation | ||
| IL_8KAL_007 | No text annotation | ||
| IL_8KAL_001 | Isolated non-canonical cWW pair | ||
| IL_8KAL_002 | No text annotation | ||
| IL_8KAL_009 | No text annotation | ||
| IL_8KAL_010 | No text annotation | ||
| IL_8KAL_004 | No text annotation |
Valid loops
No loops found
Problematic loops
No problematic loops
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