HL_8KIE_003

3D structure

PDB id

8KIE (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of YchF with 50S ribosomal subunit (local map)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.5 Å

Loop

Sequence

CUUCGG

Length

6 nucleotides

Bulged bases

8KIE|1|a|U|1814

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8KIE_003 not in the Motif Atlas

Geometric match to HL_5LYS_002

Geometric discrepancy: 0.0681

The information below is about HL_5LYS_002

Detailed Annotation

UNCG

Broad Annotation

No text annotation

Motif group

HL_61337.2

Basepair signature

cWW-tSW-F

Number of instances in this motif group

60

Unit IDs

8KIE|1|a|C|1812
8KIE|1|a|U|1813
8KIE|1|a|U|1814
8KIE|1|a|C|1815
8KIE|1|a|G|1816
8KIE|1|a|G|1817

Current chains

Chain a

23S rRNA (partial)

Nearby chains