8KIE Hairpin, Internal, and multi-helix Junction Loop Motifs
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| HL_8KIE_002 | 1/a/1751:1757 | GNRA | homologous HL_5J7L_174 NA | |
| HL_8KIE_003 | 1/a/1812:1817 | UNCG | geometric HL_5LYS_002 HL_61337.2 | |
| HL_8KIE_004 | 1/a/1849:1852 | No text annotation | homologous HL_5J7L_176 NA | |
| HL_8KIE_005 | 1/a/1873:1877 | No text annotation | homologous HL_5J7L_177 NA | |
| HL_8KIE_007 | 1/a/2672:2678 | No text annotation | homologous HL_8VTW_061 NA | |
| HL_8KIE_009 | 1/a/2977:2982 | GNRA | homologous HL_5J7L_202 NA |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| HL_8KIE_001 | No text annotation | ||
| HL_8KIE_006 | No text annotation | ||
| HL_8KIE_008 | No text annotation |
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| IL_8KIE_002 | 1/a/1595:1599, 1/a/1634:1638 | tSH-tHW-tHS | homologous IL_5J7L_300 NA | |
| IL_8KIE_003 | 1/a/1784:1786, 1/a/2116:2118 | Isolated tWW turn | homologous IL_5J7L_305 NA | |
| IL_8KIE_004 | 1/a/1787:1790, 1/a/2114:2115 | Major groove platform; stack outside cWW | homologous IL_8VTW_065 NA | |
| IL_8KIE_017 | 1/a/1787:1795, 1/a/2111:2115 | No text annotation | homologous IL_5J7L_386 NA | |
| IL_8KIE_005 | 1/a/1790:1795, 1/a/2111:2114 | Intercalated tWH | geometric IL_5J7L_307 NA | |
| IL_8KIE_006 | 1/a/1807:1812, 1/a/1817:1823 | No text annotation | homologous IL_8VTW_067 NA | |
| IL_8KIE_007 | 1/a/1833:1839, 1/a/1863:1867 | 6x5 Sarcin-Ricin; G-bulge | homologous IL_5J7L_309 NA | |
| IL_8KIE_008 | 1/a/1841:1845, 1/a/1857:1861 | Triple sheared | homologous IL_5J7L_310 NA | |
| IL_8KIE_009 | 1/a/1848:1849, 1/a/1852:1854 | Single bulged C | homologous IL_5J7L_311 NA | |
| IL_8KIE_010 | 1/a/1891:1892, 1/a/2101:2103 | Single bulged A | homologous IL_7A0S_064 IL_14190.2 | |
| IL_8KIE_012 | 1/a/2801:2805, 1/a/2846:2848 | C-loop | homologous IL_5J7L_347 NA | |
| IL_8KIE_013 | 1/a/2808:2812, 1/a/2839:2843 | UAA/GAN related, with intercalation | homologous IL_5J7L_348 NA | |
| IL_8KIE_014 | 1/a/2816:2817, 1/a/2832:2835 | Multiple bulged bases | homologous IL_5J7L_349 NA | |
| IL_8KIE_015 | 1/a/2964:2967, 1/a/2991:2995 | Multiple bulged bases with non-canonical cWW | homologous IL_5J7L_353 NA | |
| IL_8KIE_016 | 1/a/2968:2973, 1/a/2986:2990 | tHS double platform | homologous IL_5J7L_354 NA |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| IL_8KIE_001 | No text annotation | ||
| IL_8KIE_011 | No text annotation |
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| J5_8KIE_001 | 1/a/1795:1803, 1/a/1827:1828, 1/a/1872:1873, 1/a/1877:1885, 1/a/2109:2111 | No text annotation | homologous J5_5J7L_016 NA |
Problematic loops
No problematic loops
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