HL_8KIE_006
3D structure
- PDB id
- 8KIE (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of YchF with 50S ribosomal subunit (local map)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.5 Å
Loop
- Sequence
- GCGGUAAGUUC
- Length
- 11 nucleotides
- Bulged bases
- 8KIE|1|a|U|2076
- QA status
- Missing nucleotides
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_8KIE_006 not in the Motif Atlas
- Geometric match to HL_4WF9_011
- Geometric discrepancy: 0.1365
- The information below is about HL_4WF9_011
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_75660.6
- Basepair signature
- cWW-F
- Number of instances in this motif group
- 21
Unit IDs
8KIE|1|a|G|1952
8KIE|1|a|C|1953
8KIE|1|a|G|2070
8KIE|1|a|G|2071
8KIE|1|a|U|2072
8KIE|1|a|A|2073
8KIE|1|a|A|2074
8KIE|1|a|G|2075
8KIE|1|a|U|2076
8KIE|1|a|U|2077
8KIE|1|a|C|2095
Current chains
- Chain a
- 23S rRNA (partial)
Nearby chains
- Chain j
- 50S ribosomal protein L14
Coloring options: