HL_8KIE_007

3D structure

PDB id

8KIE (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of YchF with 50S ribosomal subunit (local map)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.5 Å

Loop

Sequence

C(OMU)GUUCG

Length

7 nucleotides

Bulged bases

None detected

QA status

Modified nucleotides: OMU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8KIE_007 not in the Motif Atlas

Homologous match to HL_8VTW_061

Geometric discrepancy: 0.1279

The information below is about HL_8VTW_061

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_36430.1

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

15

Unit IDs

8KIE|1|a|C|2672
8KIE|1|a|OMU|2673
8KIE|1|a|G|2674
8KIE|1|a|U|2675
8KIE|1|a|U|2676
8KIE|1|a|C|2677
8KIE|1|a|G|2678

Current chains

Chain a

23S rRNA (partial)

Nearby chains