HL_8KIE_008

3D structure

PDB id

8KIE (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of YchF with 50S ribosomal subunit (local map)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.5 Å

Loop

Sequence

GCUCCU

Length

6 nucleotides

Bulged bases

None detected

QA status

Missing nucleotides

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8KIE_008 not in the Motif Atlas

Geometric match to HL_5NFV_001

Geometric discrepancy: 0.1996

The information below is about HL_5NFV_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_69752.3

Basepair signature

cWW-F

Number of instances in this motif group

5

Unit IDs

8KIE|1|a|G|2769
8KIE|1|a|C|2770
8KIE|1|a|U|2771
8KIE|1|a|C|2772
8KIE|1|a|C|2773
8KIE|1|a|U|2793

Current chains

Chain a

23S rRNA (partial)

Nearby chains

Chain j

50S ribosomal protein L14