HL_8OEQ_006

3D structure

PDB id

8OEQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Candida albicans 80S ribosome in complex with Paromomycin (250uM)

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

CACAG

Length

5 nucleotides

Bulged bases

8OEQ|1|1|C|209, 8OEQ|1|1|A|210

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8OEQ_006 not in the Motif Atlas

Geometric match to HL_8C3A_006

Geometric discrepancy: 0.0407

The information below is about HL_8C3A_006

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_71121.1

Basepair signature

cWW-F

Number of instances in this motif group

24

Unit IDs

8OEQ|1|1|C|207
8OEQ|1|1|A|208
8OEQ|1|1|C|209
8OEQ|1|1|A|210
8OEQ|1|1|G|211

Current chains

Chain 1

25S ribosomal RNA

Nearby chains

Chain 9

Ribosomal protein L24

Chain AS

Large subunit ribosomal RNA; LSU rRNA

Chain l

60S ribosomal protein L4-B