HL_8OEQ_007

3D structure

PDB id

8OEQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Candida albicans 80S ribosome in complex with Paromomycin (250uM)

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

GUGAGAAUC

Length

9 nucleotides

Bulged bases

8OEQ|1|1|G|217, 8OEQ|1|1|A|218, 8OEQ|1|1|G|219

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8OEQ_007 not in the Motif Atlas

Homologous match to HL_8C3A_007

Geometric discrepancy: 0.0399

The information below is about HL_8C3A_007

Detailed Annotation

T-loop with unstacked turn

Broad Annotation

T-loop

Motif group

HL_08002.12

Basepair signature

cWW-cWW-F-tWH

Number of instances in this motif group

16

Unit IDs

8OEQ|1|1|G|215
8OEQ|1|1|U|216
8OEQ|1|1|G|217
8OEQ|1|1|A|218
8OEQ|1|1|G|219
8OEQ|1|1|A|220
8OEQ|1|1|A|221
8OEQ|1|1|U|222
8OEQ|1|1|C|223

Current chains

Chain 1

25S ribosomal RNA

Nearby chains

Chain 4

5.8S ribosomal RNA; 5.8S rRNA

Chain 9

Ribosomal protein L24

Chain l

60S ribosomal protein L4-B