HL_8OEQ_008
3D structure
- PDB id
- 8OEQ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of the Candida albicans 80S ribosome in complex with Paromomycin (250uM)
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.3 Å
Loop
- Sequence
- UUUGGGAAUG
- Length
- 10 nucleotides
- Bulged bases
- 8OEQ|1|1|G|283, 8OEQ|1|1|A|284, 8OEQ|1|1|A|285
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_8OEQ_008 not in the Motif Atlas
- Homologous match to HL_8C3A_008
- Geometric discrepancy: 0.0463
- The information below is about HL_8C3A_008
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_77436.2
- Basepair signature
- cWW-F-F-F-F-F
- Number of instances in this motif group
- 23
Unit IDs
8OEQ|1|1|U|278
8OEQ|1|1|U|279
8OEQ|1|1|U|280
8OEQ|1|1|G|281
8OEQ|1|1|G|282
8OEQ|1|1|G|283
8OEQ|1|1|A|284
8OEQ|1|1|A|285
8OEQ|1|1|U|286
8OEQ|1|1|G|287
Current chains
- Chain 1
- 25S ribosomal RNA
Nearby chains
- Chain AB
- 60S ribosomal protein L28
- Chain AP
- 60S ribosomal protein L42-B
- Chain t
- 60S ribosomal protein L13
- Chain v
- 60S ribosomal protein L15-A
Coloring options: