HL_8OEQ_023

3D structure

PDB id

8OEQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Candida albicans 80S ribosome in complex with Paromomycin (250uM)

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

CUUAAUUG

Length

8 nucleotides

Bulged bases

8OEQ|1|1|U|1077

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8OEQ_023 not in the Motif Atlas

Homologous match to HL_8C3A_024

Geometric discrepancy: 0.066

The information below is about HL_8C3A_024

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_77436.2

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

23

Unit IDs

8OEQ|1|1|C|1072
8OEQ|1|1|U|1073
8OEQ|1|1|U|1074
8OEQ|1|1|A|1075
8OEQ|1|1|A|1076
8OEQ|1|1|U|1077
8OEQ|1|1|U|1078
8OEQ|1|1|G|1079

Current chains

Chain 1

25S ribosomal RNA

Nearby chains

Chain 2

60S ribosomal protein L21-A

Chain AC

60S ribosomal protein L29

Chain m

Uncharacterized protein CaJ7.0206